Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J21
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       25   2.5  
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642...    29   4.9  
08_02_1148 - 24693323-24693877,24694092-24694315,24694519-246946...    28   8.5  
08_01_0059 - 394001-394708                                             28   8.5  
07_03_1136 + 24218601-24218734,24218769-24219906                       28   8.5  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 24.6 bits (51), Expect(2) = 2.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 305 APPPPPPXG 279
           APPPPPP G
Sbjct: 335 APPPPPPKG 343



 Score = 23.4 bits (48), Expect(2) = 2.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 302 PPPPPPXGXXXXXTAXLGG 246
           PPPPPP G         GG
Sbjct: 354 PPPPPPKGPSPPPPPPPGG 372


>02_02_0522 -
           11161385-11161537,11162513-11162668,11164176-11164298,
           11164404-11164466,11164512-11164577,11165128-11165232,
           11165336-11165435,11165520-11165590,11166037-11166093,
           11167215-11167292,11167367-11167441,11168490-11168540,
           11169015-11169094,11169560-11169660,11169749-11169810,
           11170084-11170590
          Length = 615

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 220 GG*KXGGGXPPKXAVXXXKXPXGGGGGGA 306
           GG   GGG PP+      + P GGG  GA
Sbjct: 76  GGGSDGGGEPPEIWRQPGEAPPGGGARGA 104


>08_02_1148 -
           24693323-24693877,24694092-24694315,24694519-24694636,
           24694761-24695132,24696998-24697324
          Length = 531

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 175 PKTXXXXXQXXXKXGGG*KXGGGXPPKXAVXXXKXPXGGGGGG 303
           P+      Q   + GG    GGG      V   K   GGGGGG
Sbjct: 24  PQRWRRRRQRGVERGGAVSGGGGGVFSIGVGGKKLHHGGGGGG 66


>08_01_0059 - 394001-394708
          Length = 235

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 542 PXRRSPXXPSXPXXXPFPXXXXSXRPPSXXYP 637
           P RR+P  PS P   P P       PP   +P
Sbjct: 20  PPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHP 51


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 220 GG*KXGGGXPPKXAVXXXKXPXGGGGGG 303
           GG   GGG   K  V   K   GGGGGG
Sbjct: 352 GGGGGGGGGGTKVRVCAPKDISGGGGGG 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,689,547
Number of Sequences: 37544
Number of extensions: 166428
Number of successful extensions: 2902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)