Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J21
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    29   3.3  
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    29   4.4  
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 217 GGG*KXGGGXPPKXAVXXXKXPXGGGGGG 303
           GG  K GGG  P           GGGGGG
Sbjct: 32  GGASKVGGGAAPPPGTSVYMGAGGGGGGG 60


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
           family, class qprotein 3 protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 217 GGG*KXGGGXP--PKXAVXXXKXPXGGGGGGA 306
           GGG K GGG    P  +V       GGGGGGA
Sbjct: 226 GGGAKSGGGGGGIPGQSVYMGAGGGGGGGGGA 257


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical
           protein K07F5.11 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 217 GGG*KXGGGX--PPKXAVXXXKXPXGGGGGGA 306
           GG  K GG    PP  +V       GGGGGGA
Sbjct: 32  GGASKVGGAGAPPPGTSVYMGAGAGGGGGGGA 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,557,545
Number of Sequences: 27780
Number of extensions: 86653
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)