Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J19
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   142   6e-35
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   100   2e-22
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.90 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.4  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  142 bits (343), Expect = 6e-35
 Identities = 64/111 (57%), Positives = 81/111 (72%)
 Frame = -1

Query: 573 GTXAXIDEGETDWKLIAIDSRDPNAEKLNDVQDVEALFXGLLRATVEWFRLYKVPDGKPV 394
           G  A +DEGETDWK+I ID  DP A KLND++DVE    GL+RAT EWFR+YK+PDGKP 
Sbjct: 143 GVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGLIRATNEWFRIYKIPDGKPE 202

Query: 393 NKFAFDGEAKNAEFAYKVVDEVHEFWKSLISGNVPDATDINKMNVSVSGSV 241
           N FAF GE KN ++A +VV E +E W+ LI+G     +D + +NVSV+GSV
Sbjct: 203 NSFAFSGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTGSV 253


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  100 bits (240), Expect = 2e-22
 Identities = 42/87 (48%), Positives = 56/87 (64%)
 Frame = -1

Query: 573 GTXAXIDEGETDWKLIAIDSRDPNAEKLNDVQDVEALFXGLLRATVEWFRLYKVPDGKPV 394
           G    ID+GETDWK++AID  DP A+ LND+ DV+ L   LL  T +WF +YK+PDGKP 
Sbjct: 148 GALGLIDQGETDWKILAIDINDPRAKLLNDISDVQNLMPRLLPCTRDWFAIYKIPDGKPK 207

Query: 393 NKFAFDGEAKNAEFAYKVVDEVHEFWK 313
           N+F FDG       A  ++ + H+ WK
Sbjct: 208 NRFFFDGNYLPKSDALDIIAQCHQHWK 234


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 414 VPDGKPVNKFAFDGEAKN 361
           +PDGKP+NK A+  E +N
Sbjct: 505 IPDGKPLNKIAWQPEKRN 522


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 26/85 (30%), Positives = 40/85 (47%)
 Frame = +2

Query: 278 SVASGTLPLMRLFQNSWTSSTTL*ANSAFLASPSNANLFTGLPSGTLXSLNHSTVARRRP 457
           S  S + PL     NS T++T+  A S+     +++ L +  PS T  S  +ST A    
Sbjct: 247 STVSSSTPLTS--SNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT--- 301

Query: 458 XNNASTSCTSFNFSAFGSRESIAIS 532
            + +ST  TS N +   S  S  +S
Sbjct: 302 -SASSTPLTSVNSTTTTSASSTPLS 325


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 360 AEFAYKVVDEVHEFWKSLISGNVPDATD 277
           A+F YK++D     W SL+   +P+ TD
Sbjct: 35  AKFVYKLLDYTKGNWLSLLLRFLPETTD 62


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 375 GEAKNAEFAYKVVDEVHEFWKSLIS 301
           GE   ++ + K+ D++H F+KSL S
Sbjct: 407 GEELASQISSKIYDDLHAFYKSLNS 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,386
Number of Sequences: 5004
Number of extensions: 37613
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)