Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_J16
(1104 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 31 2.2
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 30 2.8
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 3.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 3.8
07_01_0516 - 3850252-3852870 30 3.8
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.8
01_03_0270 + 14445240-14445464,14445490-14445655,14446193-144463... 30 3.8
09_03_0145 - 12749288-12751510 29 6.6
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 6.6
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621 29 8.7
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 2.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 94 PPPPPPSSGSPPPP 107
Score = 30.7 bits (66), Expect = 2.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 95 PPPPPSSGSPPPPP 108
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 30.3 bits (65), Expect = 2.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 688 GGGGXPPXXGGGGG 729
GGGG PP GGGGG
Sbjct: 63 GGGGGPPYYGGGGG 76
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 614 PPPPPRPPGAPPPP 627
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 626 PPPPPGKPGGPPPP 639
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 727 PPPPXXXGGXPPPP 686
PPPP GG PPPP
Sbjct: 627 PPPPGKPGGPPPPP 640
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 931 PPPPPGKPGGPPPP 944
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 727 PPPPXXXGGXPPPP 686
PPPP GG PPPP
Sbjct: 932 PPPPGKPGGPPPPP 945
>07_01_0516 - 3850252-3852870
Length = 872
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 31 PPPPPAHGPSPPPP 44
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 336 PPPPPPKGPPPPPP 349
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 344 PPPPPPAKGPPPPP 357
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 345 PPPPPAKGPPPPPP 358
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 354 PPPPPPKGPSPPPP 367
>01_03_0270 +
14445240-14445464,14445490-14445655,14446193-14446341,
14446634-14446674,14447683-14447755
Length = 217
Score = 29.9 bits (64), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
P PPP GG PPPP
Sbjct: 13 PSPPPSCGGIPPPP 26
>09_03_0145 - 12749288-12751510
Length = 740
Score = 29.1 bits (62), Expect = 6.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP G PPPP
Sbjct: 31 PPPPPPPGIQPPPP 44
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 29.1 bits (62), Expect = 6.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 41 GVPPVKAFGGPPSXRGNTSLXKPGPXKP 124
G P + G PS RGN + P P P
Sbjct: 454 GFPEPYGYSGSPSHRGNAGMKSPSPFHP 481
>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
Length = 283
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 728 PPPPPXXGGXPPPP 687
PPPPP GG PPP
Sbjct: 50 PPPPPDDGGEFPPP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,130
Number of Sequences: 37544
Number of extensions: 294653
Number of successful extensions: 4342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3111
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3316323664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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