Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J14
         (1105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   0.77 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 PPPPXPPPGXXKXXPPP 463
           PPPP PPPG     PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect(2) = 0.77
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 576 PPPPXFFXXNKXXGGXGXXXXPPPPXPPP 490
           PPPP      K   G G      PP PPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 21.8 bits (44), Expect(2) = 0.77
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 513 PPPPXPPPGXXKXXPP 466
           PPPP   P   +  PP
Sbjct: 363 PPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 513 PPPPXPPPGXXKXXPPP 463
           PPPP PPPG      PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 726 PXXPXXPPPPPXXXPP 773
           P  P  PPPPP   PP
Sbjct: 6   PGNPPPPPPPPGFEPP 21


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
 Frame = +1

Query: 928  PRXRPXXPXXPXXXXXXXPXXXTXSPRRXXAXXPPAXXX-----PPXFXXXPXXLPPXPP 1092
            P   P  P  P       P   + +P    +  PPA        PP     P  +PP PP
Sbjct: 140  PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,169
Number of Sequences: 5004
Number of extensions: 14693
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 583709326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)