Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J13
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.70 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.70 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 TTSQRWSRGSTPRSLSTSRANNHHIKP 461
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 TTSQRWSRGSTPRSLSTSRANNHHIKP 461
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 58  CINTLHWLIILHES 17
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 58  CINTLHWLIILHES 17
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 280 SNYFWFSWYHSLFLGLVVHPFHFLQGHGRRTNQPQ 384
           S+YF  S+   L  G V HP    Q +G     PQ
Sbjct: 2   SSYFANSYIPDLRNGGVEHPHQHQQHYGAAVQVPQ 36


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 418 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAQ 320
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 418 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAQ 320
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 GLLFILFTFFRVTVEEQ 373
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 GLLFILFTFFRVTVEEQ 373
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 494 YPMQHQVFPLYWFDVVVV 441
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 494 YPMQHQVFPLYWFDVVVV 441
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,799
Number of Sequences: 438
Number of extensions: 3202
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)