Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J12
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.2  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   6.7  
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886...    29   6.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 540 PPXKKKXPPPXXXXKKKXPPPPXXG 614
           PP   K PPP    K   PPPP  G
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKG 361



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 540 PPXKKKXPPPXXXXKKKXPPPP 605
           PP   K PPP    K   PPPP
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPP 367



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 540 PPXKKKXPPPXXXXKKKXPPPPXXG 614
           PP K   PPP        PPPP  G
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPPGG 372


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 PPXKKKXPPPXXXXKKKXPPPPXXG 614
           PP +++ PPP     +  PPPP  G
Sbjct: 76  PPQQQQPPPPPQMYYQPPPPPPPYG 100


>03_05_1153 +
           30787574-30787608,30787982-30788089,30788651-30788689,
           30789181-30789184,30789496-30789580,30789609-30790321
          Length = 327

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 543 PXKKKXPPPXXXXKKKXPPPP 605
           P KK+ PPP    ++  PPPP
Sbjct: 224 PPKKEPPPPPPPKQEPCPPPP 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.151    0.521 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,374
Number of Sequences: 37544
Number of extensions: 347300
Number of successful extensions: 11280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8859
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)