Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J11
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.21 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.34 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.56 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   0.81 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -1

Query: 619 PPPXPPPPXXKKKXXPPXXXXXXXXKXGGA 530
           PPP PPPP       PP          GG+
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790



 Score = 26.6 bits (56), Expect(2) = 0.21
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 23.0 bits (47), Expect(2) = 0.21
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 919 PPPPPPXXKXXXXGG 875
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 25.4 bits (53), Expect(2) = 0.34
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 922 PPPPPPPXXKXXXXGG 875
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.34
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 925 PPPPPPPP 902
           P PPPPPP
Sbjct: 905 PTPPPPPP 912


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 620 PPPXPPPPXXKKKKXPP 570
           PPP PPPP  +    PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 619 PPPXPPPPXXKKKXXPP 569
           PPP PPPP  +    PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.8 bits (54), Expect(2) = 0.56
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 620 PPPXPPPPXXKKKK 579
           PPP PPP   KK+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 22.2 bits (45), Expect(2) = 0.56
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 626 FXPPPXPPPP 597
           F PP  PPPP
Sbjct: 18  FEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 616 PPXPPPPXXKKKXXPP 569
           PP PPPP  + +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 617 PPXPPPPXXKKKKXPP 570
           PP PPPP  + +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 23.8 bits (49), Expect(2) = 0.81
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 925 PPPPPPP 905
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 4.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 925 PPPPPPP 905
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 0.81
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 922 PPPPPPP 902
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 4.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 919 PPPPPP 902
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925  PPPPPPPP 902
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 620  PPPXPPPPXXKKKK 579
            PPP PPPP   +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 925 PPPPPPPP 902
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,639
Number of Sequences: 5004
Number of extensions: 12768
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)