Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_J10
(1112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.004
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 32 0.031
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.88
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.88
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.67
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 738 PPPPPPPPPXXXXXG 782
PPPPPPPPP G
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 29.5 bits (63), Expect(2) = 0.004
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 741 PPPPPPPPXXXXXGG 785
PPPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 740 PPPPPPPPXXGXXGGG 787
PPPPPPPP G G G
Sbjct: 761 PPPPPPPP--GVAGAG 774
Score = 27.1 bits (57), Expect(2) = 0.72
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 743 PPPPPPPXXGXXGGG 787
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect(2) = 0.004
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 738 PPPPPPPP 761
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 21.0 bits (42), Expect(2) = 0.72
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 740 PPPPPP 757
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 32.3 bits (70), Expect = 0.13
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 738 PPPPPPPPPXXXXXGG 785
PPPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 29.5 bits (63), Expect(2) = 0.031
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 741 PPPPPPPPXXXXXGGG 788
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 0.031
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 738 PPPPPPPP 761
P PPPPPP
Sbjct: 905 PTPPPPPP 912
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 738 PPPPPPPPP 764
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 738 PPPPPPPPP 764
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 27.1 bits (57), Expect = 4.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 926 FXXPPPPPPPP 894
+ PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 738 PPPPPPPPP 764
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 738 PPPPPPPP 761
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 740 PPPPPPPP 763
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 738 PPPPPPPP 761
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 917 PPPPPPPP 894
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 738 PPPPPPPP 761
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 740 PPPPPPPP 763
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,104
Number of Sequences: 5004
Number of extensions: 19345
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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