Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_J06
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.75
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 29 4.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 7.0
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 7.0
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 9.2
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 27 9.2
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 27 9.2
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP KK PPPP
Sbjct: 364 PPPPPPPGGKKGGPPPP 380
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 573 PPPPXXXXKKXXPPPPXXXXG 511
PPPP KK PPPP G
Sbjct: 365 PPPPPPGGKKGGPPPPPPKGG 385
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP ++ PPPP
Sbjct: 52 PPPPPLCRRRRSWPPPP 68
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 605 PPPPPPILPNRSVPPPP 621
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 606 PPPPPILPNRSVPPPPP 622
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 638 PPPPPPSLPNRLVPPPP 654
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP KK PPP
Sbjct: 750 PPPPPLMTGKKAPAPPP 766
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 574 PPPPXXXXKKKXXPPPP 524
PPPP KK PPPP
Sbjct: 751 PPPPLMTGKKAPAPPPP 767
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP ++ PPPP
Sbjct: 769 PPPPPFSVQQQQLPPPP 785
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 93 PPPPPPLPQHRLEPPPP 109
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPPXXXXXG 507
PPPPP + PPPP G
Sbjct: 52 PPPPPPPPTQPAPPPPPPARSGG 74
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 362 PPPPPPPPPPRPPPPPP 378
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 575 PPPPPXXXXKKXXPPPP 525
PPPPP + PPPP
Sbjct: 363 PPPPPPPPPRPPPPPPP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,105
Number of Sequences: 37544
Number of extensions: 338679
Number of successful extensions: 2504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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