Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J02
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    33   0.19 
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.4  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   9.5  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 449  PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPP 577
            PP        LP P    P  SG P    PPP   +   +PPP
Sbjct: 1169 PPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPP 1211


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/109 (22%), Positives = 27/109 (24%)
 Frame = -2

Query: 774 PXXGGAGNXXRDPXEGXXXGXPXXXXXGPXXXXXXXGEXPXGXEXPRGAXXXXXPXGXXR 595
           P  GG G     P  G   G       G        G  P G     G        G   
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPE 219

Query: 594 RXXXXXGGGTPXXRXXXGGGXXXXGXPDSXGXXXXGFGSXXGXXXXXGG 448
           R     GGG    +   GGG    G          G G+        GG
Sbjct: 220 RVIGGGGGGGGALKCVVGGGGGGGGALKRAAGSGGGGGALECEIGGGGG 268



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = -2

Query: 606 GXXRRXXXXXGGGTPXXRXXXGGGXXXXGXPDSXGXXXXGFGSXXGXXXXXGG 448
           G  RR     GGG    R   GG     G P   G    G G   G     GG
Sbjct: 142 GAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGG 194


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 236  HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 337
            H A C+ D  G GVR + +     RLR+G  G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,448
Number of Sequences: 37544
Number of extensions: 228257
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)