Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_J02
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.17
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.17
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.17
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +2
Query: 449 PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXRRXXPXGXXXXX 628
PP P P P P +SG P PPP PPP P
Sbjct: 736 PPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Query: 629 APLGXSXPXGXSPXXXXXXXGP 694
AP+ P P GP
Sbjct: 794 APMAPVIPDYLPPKKVPKVDGP 815
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +2
Query: 449 PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXRRXXPXGXXXXX 628
PP P P P P +SG P PPP PPP P
Sbjct: 736 PPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Query: 629 APLGXSXPXGXSPXXXXXXXGP 694
AP+ P P GP
Sbjct: 794 APMAPVIPDYLPPKKVPKVDGP 815
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +2
Query: 449 PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXRRXXPXGXXXXX 628
PP P P P P +SG P PPP PPP P
Sbjct: 319 PPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
Query: 629 APLGXSXPXGXSPXXXXXXXGP 694
AP+ P P GP
Sbjct: 377 APMAPVIPDYLPPKKVPKVDGP 398
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +2
Query: 416 PXGXXXXSLXXPPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXR 595
P G PP P P P P PPP R G PPP
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHP 743
Query: 596 RXXPXG 613
P G
Sbjct: 744 YQQPYG 749
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +2
Query: 416 PXGXXXXSLXXPPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXR 595
P G PP P P P P PPP R G PPP
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHP 743
Query: 596 RXXPXG 613
P G
Sbjct: 744 YQQPYG 749
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/111 (25%), Positives = 29/111 (26%), Gaps = 5/111 (4%)
Frame = +2
Query: 449 PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXRRXXPXGXXXXX 628
PP P P P P P PPP PPP R P G
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTP---RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 317
Query: 629 AP-----LGXSXPXGXSPXXXXXXXGPXXXXXGXPXXXPSXGSLXQFPAPP 766
P G G P P P PS G +P PP
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP-GMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/111 (25%), Positives = 29/111 (26%), Gaps = 5/111 (4%)
Frame = +2
Query: 449 PPXXXXXPXXLPXPXXXXPXLSGXPXXXXPPPXXXRXXGVPPPXXXXXRRXXPXGXXXXX 628
PP P P P P P PPP PPP R P G
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTP---RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 327
Query: 629 AP-----LGXSXPXGXSPXXXXXXXGPXXXXXGXPXXXPSXGSLXQFPAPP 766
P G G P P P PS G +P PP
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP-GMYPPPP 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,439,227
Number of Sequences: 27780
Number of extensions: 161671
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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