Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_I21
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.44 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   3.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.4  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/67 (22%), Positives = 26/67 (38%)
 Frame = +2

Query: 386  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRXPNTAASPXTNAP 565
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++    + 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 566  DVLSLXV 586
             + S  V
Sbjct: 1703 PITSSSV 1709



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
 Frame = +2

Query: 371 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 523
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 524 RXPNTAASPXTNAPDVLS 577
             P T++S   ++  + S
Sbjct: 381 STPITSSSVLNSSTPITS 398


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 508 NLHPPAEXEHRRIARXXRXG 567
           NL  PAE +HRR+ R  R G
Sbjct: 235 NLDSPAELKHRRLVRSQRNG 254


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 354  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 497
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 341 KTFYHHANFLPQQIL 385
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 356 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 472
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,076
Number of Sequences: 5004
Number of extensions: 48772
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)