Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_I21
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1101 - 30408944-30410410 31 0.80
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 30 2.5
12_02_1120 - 26228618-26229403 29 3.2
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 4.3
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.3
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 28 7.5
08_01_0371 - 3284103-3284582 28 7.5
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 28 7.5
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 7.5
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 28 9.9
01_02_0098 - 11087875-11089110,11091744-11092022 28 9.9
>03_05_1101 - 30408944-30410410
Length = 488
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 193 YWSPRAPTALSLGCAAS*ETMLWQVQPETST 101
Y+SPR L+LG AS LW ++PE S+
Sbjct: 294 YFSPRQVRELALGLEASNHPFLWVIRPEDSS 324
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 388 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHAL--HRKNLHP 519
S NY+ S +R H E +R H S HKH L H K+L P
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHSKDLEP 769
>12_02_1120 - 26228618-26229403
Length = 261
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 320 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHGLPILEPP 180
GGE AA P R + + T R R+ +RS H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 338 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 469
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 313 SPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHL 474
S PAT + + P +LLT+ TSH + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +3
Query: 174 GARGLQYRQSVLEA*SR---RLADPSAGLRTVEAICPVLAD----WVGRDRGS 311
GARG +R +L +L D AGLR + A CP LAD W RG+
Sbjct: 102 GARGAPHRMPLLANGPTLWYQLDDDVAGLRELLAACPSLADEPAPWYSLARGT 154
>08_01_0371 - 3284103-3284582
Length = 159
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/68 (30%), Positives = 26/68 (38%)
Frame = -3
Query: 320 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHGLPILEPPRSDCTFARVRRLV 141
GGE A A+ R A+ R VR+ R G P + P R C R L
Sbjct: 32 GGEAEASASQAWRRGDANVHSDVRVRRGVRRPLRRTATGGAPPMLPQRKRCPTNRRAMLR 91
Query: 140 GDYAVAGP 117
A +GP
Sbjct: 92 RGGARSGP 99
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 462 PRTLVKHAQARTSPEKPASASGXRTPPHRQ 551
P+ L K A +PEKPA+A+ PP ++
Sbjct: 46 PKPLRKADTAARTPEKPAAAAAAAAPPAKE 75
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 249 LRTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 419
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 435 MLLPH*GSQPRTLVKHAQARTSPEKPASASGXRTPPHRQXXTXR 566
+LLP S PR+ H AR +P P R PP R T R
Sbjct: 44 LLLPLTPSPPRSSSTHGSARLTPPLPLPLP-RRQPPWRDQLTLR 86
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 313 RLPRSR-PTQSARTGQIASTVRRPADGS 233
RLP+S+ P + AR Q AS RRP DG+
Sbjct: 12 RLPQSQAPRRQARGLQYASPERRPLDGA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,879,349
Number of Sequences: 37544
Number of extensions: 411578
Number of successful extensions: 1307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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