Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_I16
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.59 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
 Frame = +3

Query: 687 PPPXPXXXXXXXAX------PGXXXXXXPXPPPPXPXXXXXXPPPP 806
           PPP P       A       P       P PPPP P      PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 693 PXPXXXXXXXAXPGXXXXXXPXPPPPXPXXXXXXPPPP 806
           P P         P       P PPPP        PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 688 PPPXPXXXXFXXRPPGXXXXXXPXPPPPXP 777
           PPP P        PPG      P PPPP P
Sbjct: 761 PPPPPP-------PPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 629 PXAPPXXXXXXXXXXTXXXXPPPXPXXXXXXXXPRXXXXXXXXPPPPXXXXXXXXPPPP 805
           P  PP               PPP P        P         PPPP        PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP-------PPPPP 783



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 753 PXPPPPXPXXXXXXPPPP 806
           P PPPP        PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +1

Query: 673 NXXXXPPPXPXXXXFXXRPP-GXXXXXXPXPPPPXP 777
           N    PPP P       +PP G        PPPP P
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +3

Query: 687 PPPXPXXXXXXXAXP-GXXXXXXPXPPPPXPXXXXXXPPPP 806
           PPP P       + P        P PPPP         PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 688 PPPXPXXXXFXXRPPGXXXXXXPXPPPPXPXXTPXXPPP 804
           PPP P        P        P PPPP    +    PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +3

Query: 687  PPPXPXXXXXXXAXPGXXXXXXPXPPPPXPXXXXXXPPPP 806
            PPP P       + P         PPPP P       P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 754 PXPPPPXPXXTPXXPPP 804
           P PPPP P   P   PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 753 PXPPPPXPXXXXXXPPPP 806
           P PPPP P       PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 753 PXPPPPXPXXXXXXPPPP 806
           P PPPP        PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 753 PXPPPPXPXXXXXXPPPP 806
           P PPPP P      P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.143    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,917
Number of Sequences: 5004
Number of extensions: 23656
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)