Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_I04
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.8  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 494 PLIFK*MMNHKLCALLVVIPRIL 426
           PL++   M+ +LC  LVV P ++
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYVI 31


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 494 PLIFK*MMNHKLCALLVVIPRIL 426
           PL++   M+ +LC  LVV P ++
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYVI 30


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 621 WMLSLGWLVXGIRGFD 668
           W+ SLGW +  + G++
Sbjct: 176 WLFSLGWTIAPMFGWN 191


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 621 WMLSLGWLVXGIRGFD 668
           W+ SLGW +  + G++
Sbjct: 52  WLFSLGWTIAPMFGWN 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,894
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)