Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_I03
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.81 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.7  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 35/142 (24%), Positives = 37/142 (26%), Gaps = 10/142 (7%)
 Frame = +3

Query: 438 ALTPPPXRLDXXXXXXXXXPPQXXPVXRLPXXXXXXPSXXXXXSPXPXS------PXPXP 599
           +L PPP             PPQ       P      PS      P   S      P P P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPP-PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393

Query: 600 XXXXXXGAXXPPMXXXPHXSPHPXXFXPGXXPLPPXXPXPXARXPXXXG----PXXXPSH 767
                     PP+      S  P    P   P  P    P A      G    P   PS 
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453

Query: 768 XFPXPPXXANXPXXXXLTPXPP 833
               PP  A  P    L P  P
Sbjct: 454 PI-APPLPAGMPAAPPLPPAAP 474



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 27/126 (21%), Positives = 33/126 (26%), Gaps = 11/126 (8%)
 Frame = +3

Query: 375 VPKXXRXXTXPAPPXPXDXXCALTPPPXRLDXXXXXXXXXPPQXXPVXRLPXXXXXXPSX 554
           +P   +  + P PP P         PP             PP   P    P       + 
Sbjct: 351 IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410

Query: 555 XXXXSPXPXSPX----------PXPXXXXXXGAXX-PPMXXXPHXSPHPXXFXPGXXPLP 701
                P P  P           P        GA   PP+      +P      P   PLP
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470

Query: 702 PXXPXP 719
           P  P P
Sbjct: 471 PAAPAP 476


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 34/144 (23%), Positives = 36/144 (25%), Gaps = 2/144 (1%)
 Frame = +3

Query: 408  APPXPXDXXCAL-TPPPXRLDXXXXXXXXXPPQXXPVXRLPXXXXXXPSXXXXXSPXPXS 584
            APP P         P P             PP   P    P      PS      P P  
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK---PSVAAPPVPAPSG 1157

Query: 585  PXPXPXXXXXXGAXXPPMXXXPHXSPHPXXFXPGXXPLPPXXPXPXARXP-XXXGPXXXP 761
              P P          PP+       P       G  P+PP    P    P     P   P
Sbjct: 1158 APPVPKP----SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213

Query: 762  SHXFPXPPXXANXPXXXXLTPXPP 833
            S   P P   A  P     T   P
Sbjct: 1214 STAPPVPTPSAGLPPVPVPTAKAP 1237



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/96 (21%), Positives = 23/96 (23%)
 Frame = +3

Query: 546  PSXXXXXSPXPXSPXPXPXXXXXXGAXXPPMXXXPHXSPHPXXFXPGXXPLPPXXPXPXA 725
            P      S  P  P P             P    P  +P       G    PP  P P +
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071

Query: 726  RXPXXXGPXXXPSHXFPXPPXXANXPXXXXLTPXPP 833
              P    P   P    P P      P      P  P
Sbjct: 1072 EIPSIPAPSGAP--PVPAPSGIPPVPKPSVAAPPVP 1105


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/72 (26%), Positives = 19/72 (26%)
 Frame = -1

Query: 784 GGXGXXCEGXXXGPXXXGXRAXGXGXXGGRGXXPGXKXXGWGLXWGXXXIGGXXAPXXXX 605
           GG G    G   GP   G      G     G   G      G   G    GG        
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250

Query: 604 XXGXGXGXSGXG 569
             G G G  G G
Sbjct: 251 LGGFGGGPGGFG 262


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
 Frame = +3

Query: 576 PXSPXPX-PXXXXXXGAXXPPMXXXPHXSPHPXXFXPGXXP-LPPXXPXPXARXPXXXGP 749
           P +P P  P          PP    P  SP      P   P +P   P P         P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 750 XXXPSHXFPXPPXXANXP 803
              PS     PP     P
Sbjct: 185 PSAPSLPSAVPPMPPKVP 202


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 318 LRSLISNLSNTCDLTPLPEWSCEQSAW 238
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,959
Number of Sequences: 5004
Number of extensions: 19340
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)