Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_I01
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0040 + 25341418-25341810                                         29   4.4  
12_02_0954 - 24757417-24758214                                         29   5.8  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   5.8  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    29   5.8  

>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 115 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 213
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 59  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 190
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 170 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 337
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 793 PPPXKKKXGGXXGXXGGG 740
           PPP  KK GG  G  GGG
Sbjct: 24  PPPVSKKGGGGGGGGGGG 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,342
Number of Sequences: 37544
Number of extensions: 300740
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)