Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H24
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    55   9e-09
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    55   1e-08
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.6  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   2.9  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = -1

Query: 540 KKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 367
           KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 611 VIWTQSAFGRLDPLFG 564
           VIWT+SAFG LD +FG
Sbjct: 250 VIWTKSAFGLLDSVFG 265


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = -1

Query: 540 KKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 367
           KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 611 VIWTQSAFGRLDPLFG 564
           VIWT+SAFG LD +FG
Sbjct: 250 VIWTKSAFGLLDSVFG 265


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 364 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 525
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 546 KQKKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 370
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 587 GRLDPLFGHGRHHRNKRRTSTCPSQRW 507
           G  + LF HG H       S CP++RW
Sbjct: 370 GSPELLFMHGGHTNRISEFSWCPNERW 396


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 505 GHLWLGQVEVLLLFRWCLP*PNKGSSLPNAD*VQMTNV 618
           GH+W+G ++ +L++        KG +L N D  Q+ NV
Sbjct: 58  GHVWIGSLKNILIYL-----KQKGYNLDNFDAKQLANV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,362
Number of Sequences: 5004
Number of extensions: 32609
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)