Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H24
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           76   3e-14
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    73   2e-13
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.3  
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157...    28   9.1  
01_01_0283 + 2355183-2355245,2355455-2356045                           28   9.1  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
 Frame = -1

Query: 642 EXVPGGHXD--VXHLDSVRIRQA*PLIRSWKTPSKQKKNFNLPQPKMANTDLTRLFKSDE 469
           +  PGGH    V   +S   ++   +  +++ PS +KK F LP+PKMAN DL R+  SDE
Sbjct: 244 DLAPGGHLGRFVIWTESA-FKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDE 302

Query: 468 IRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 367
           ++ V++  NK V R  ++ NPL N  A+LKLNPY
Sbjct: 303 VQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
 Frame = -1

Query: 642 EXVPGGHXDVXHL-DSVRIRQA*PLIRSWKTPSKQKKNFNLPQPKMANTDLTRLFKSDEI 466
           +  PGGH     +      ++   +   + TP+ +KK F LP+PKMAN DL+RL  SDE+
Sbjct: 243 DLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEV 302

Query: 465 RKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 367
           + V++  NK V     + NPL N  A+LKLNPY
Sbjct: 303 QSVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 462
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>11_08_0094 -
           28314681-28314747,28315264-28315353,28315589-28315725,
           28317020-28317589
          Length = 287

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 630 GGHXDVXHLDSVRIRQA*PLIRSWKTPSKQKKNFNLPQPKMANTDLTRLFK 478
           GGH +V   D  R+RQ      S  +PS Q++    PQ + A    T   K
Sbjct: 69  GGHMNVHRRDRARLRQR--QTSSSSSPSHQEEEAEAPQDQQAGPYYTSFSK 117


>01_01_0283 + 2355183-2355245,2355455-2356045
          Length = 217

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 584 RLDPLFGHGRHHRNKRRTSTCPSQR 510
           RL PL GH R  +  RR  TC  +R
Sbjct: 18  RLSPLQGHARGGQGARRRETCALER 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,013
Number of Sequences: 37544
Number of extensions: 259556
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)