Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H23
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   149   4e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   149   4e-37
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   6.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (361), Expect = 4e-37
 Identities = 85/179 (47%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = -3

Query: 635 IGXLGFTKGKGXQXVHFWWQPXKLPRXXHKVLGN--CLHGAGIXLGXR-SLXSGWSEGYH 465
           I  +G T+GKG +     W   +LPR  H+ L    C+ GA      + ++    + GY 
Sbjct: 215 IDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI-GAWHPANVQWTVARAGNAGYM 273

Query: 464 XRTE*TRNLXYWTGIHKKDGKVIKNNAFTEYDLXEKSITPMGGFPHYGEVNNDFVMIKGC 285
            RT+    + Y  G    D K    NA T++D  EK ITPMGGF  YG V NDFVM+ G 
Sbjct: 274 HRTQLNSKI-YRIGAGD-DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGA 327

Query: 284 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
             GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 328 TPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (361), Expect = 4e-37
 Identities = 85/179 (47%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = -3

Query: 635 IGXLGFTKGKGXQXVHFWWQPXKLPRXXHKVLGN--CLHGAGIXLGXR-SLXSGWSEGYH 465
           I  +G T+GKG +     W   +LPR  H+ L    C+ GA      + ++    + GY 
Sbjct: 215 IDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI-GAWHPANVQWTVARAGNAGYM 273

Query: 464 XRTE*TRNLXYWTGIHKKDGKVIKNNAFTEYDLXEKSITPMGGFPHYGEVNNDFVMIKGC 285
            RT+    + Y  G    D K    NA T++D  EK ITPMGGF  YG V NDFVM+ G 
Sbjct: 274 HRTQLNSKI-YRIGAGD-DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGA 327

Query: 284 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
             GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 328 TPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 422 FLSNTINFLFIQYGDDN 472
           FLS T+ +LF+ + DDN
Sbjct: 441 FLSETLKYLFLLFDDDN 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,716
Number of Sequences: 5004
Number of extensions: 51806
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)