Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H22
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.033
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -3

Query: 398 PXXXXGAXPPPPPXFXPXXGGGGGXPPXXXPPP 300
           P    G  PPPPP   P    G G PP   PPP
Sbjct: 754 PAPIMGGPPPPPP---PPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 398 PXXXXGAXPPPPPXFXPXXGGGG 330
           P    GA PPPPP   P    GG
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 549 PPPPPXSXXXXXXNKTHPPPXXXXVXXAGGVXXXXPXP 662
           PPPPP            PPP    V  AGG     P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVS-AGGSRYYAPAP 797



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 319 GGXPPPPPXXGXKXGG 366
           GG PPPPP  G    G
Sbjct: 759 GGPPPPPPPPGVAGAG 774



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 308 GVXXGGXPPPPPXXXKKXGGG 370
           GV   G PPPPP       GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 303 GGXXXGGGAPPP-PXXXXKXGGGGGXG 380
           GG   G G PPP P      GG GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 380  AXPPPPPXFXPXXGGGGGXPPXXXPP 303
            A PPPPP   P  G     P    PP
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPP 1906


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 21.8 bits (44), Expect(2) = 9.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 378 PPPPPPXF 355
           PPPPPP +
Sbjct: 25  PPPPPPGY 32



 Score = 21.4 bits (43), Expect(2) = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 399 PXFXXXGPPPPPP 361
           P F     PPPPP
Sbjct: 16  PGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,191
Number of Sequences: 5004
Number of extensions: 20042
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)