Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H21
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.33 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 704 PPXXXFFXXXPPPPPPXXXXXXXXXXXPPPPPPXXXXXGG 823
           PP        PPPPPP           PPPPPP     GG
Sbjct: 752 PPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 704 PPXXXFFXXXPPPPPPXXXXXXXXXXXPPPPPPXXXXXGGG 826
           PP        P P P            PPPPPP     G G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 706 PPXXFFLXXPPPPPPXXXXXXXXXXXPPPSPSXXXXXGGGG 828
           PP    +  PPPPPP           PPP P        GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG---PPPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 734 PPPPPPXXXXXXXXXXXPPPPPPXXXXXG 820
           PPPPPP            P PPP     G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG 760



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 737 PPPPPXXXXXXXXXXXPPPPPPXXXXXGG 823
           PPPPP           P P PP     GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG 760


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 734 PPPPPPXXXXXXXXXXXPPPPP 799
           PPPPPP           PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.7 bits (66), Expect = 0.33
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 737 PPPPPXXXXXXXXXXXPPPPPP 802
           PPPPP           PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 785 PPPPPPXXXXXGGG 826
           PPPPPP      GG
Sbjct: 947 PPPPPPPLVSAAGG 960



 Score = 21.0 bits (42), Expect(2) = 4.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 734 PPPPPP 751
           PPPPPP
Sbjct: 907 PPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,283
Number of Sequences: 5004
Number of extensions: 22601
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)