Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H20
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    79   5e-16
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    79   5e-16
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   2.6  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   7.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 42/79 (53%), Positives = 48/79 (60%)
 Frame = -1

Query: 351 MGVFPHYGEVNQRLCDDQGLLHGT*KAYHYS*KSLRVHTKRAALEKINLKFIDTSSKFGH 172
           MG F  YG V        G   G  K      KSL  HT R ALE ++LK+IDT+SKFGH
Sbjct: 308 MGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGH 367

Query: 171 GRFQTPADKAAFMGTLKKD 115
           GRFQTPA+   F+GTLKKD
Sbjct: 368 GRFQTPAEAKQFLGTLKKD 386



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
 Frame = -2

Query: 656 QDEMXXALX-HQGKGYKGVIFX-GTQRXTPXTHKGFRKIXXXGXXNPLGVXXXKFGXSKR 483
           Q+EM   +   +GKG +G     GT+R    TH+G RK+   G  +P  V          
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNA 270

Query: 482 FFFPXLK*TRNFXXXTGIPQKGCQVXKNKAFTGVGXX*EIHYPGWGFSPIMVK*TNDFVM 303
            +             + I + G       A T      +   P  GF    V   NDFVM
Sbjct: 271 GYM------HRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVV-ENDFVM 323

Query: 302 IKXCCMGPKKRIITLR 255
           +     GP KR++TLR
Sbjct: 324 LNGATPGPVKRVLTLR 339


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 42/79 (53%), Positives = 48/79 (60%)
 Frame = -1

Query: 351 MGVFPHYGEVNQRLCDDQGLLHGT*KAYHYS*KSLRVHTKRAALEKINLKFIDTSSKFGH 172
           MG F  YG V        G   G  K      KSL  HT R ALE ++LK+IDT+SKFGH
Sbjct: 308 MGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGH 367

Query: 171 GRFQTPADKAAFMGTLKKD 115
           GRFQTPA+   F+GTLKKD
Sbjct: 368 GRFQTPAEAKQFLGTLKKD 386



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
 Frame = -2

Query: 656 QDEMXXALX-HQGKGYKGVIFX-GTQRXTPXTHKGFRKIXXXGXXNPLGVXXXKFGXSKR 483
           Q+EM   +   +GKG +G     GT+R    TH+G RK+   G  +P  V          
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNA 270

Query: 482 FFFPXLK*TRNFXXXTGIPQKGCQVXKNKAFTGVGXX*EIHYPGWGFSPIMVK*TNDFVM 303
            +             + I + G       A T      +   P  GF    V   NDFVM
Sbjct: 271 GYM------HRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVV-ENDFVM 323

Query: 302 IKXCCMGPKKRIITLR 255
           +     GP KR++TLR
Sbjct: 324 LNGATPGPVKRVLTLR 339


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 203 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 90
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 136 HGYTQEGSYSRRSCGYHNPS 77
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 YAHAETSKSNDTLFRSHAAXLDHHKVV 317
           Y   +TS+ NDT   SH++ LD ++++
Sbjct: 475 YLQNQTSEINDTNHSSHSSPLDLNRMI 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,692
Number of Sequences: 5004
Number of extensions: 44690
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)