Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H17
         (1153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.099
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.92 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.92 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    28   2.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.099
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 540 PPPXXFFXXPPPPPPXXXXGXGGGGXIFKXTPPP 439
           PPP      PPPPPP    G  G G      PPP
Sbjct: 752 PPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 540 PPPXXFFXXPPPPPPXXXXGXGGGGXIFKXTP 445
           PPP      PPPPPP       GG   +   P
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.5 bits (63), Expect = 0.92
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 542 PPPPXXFXXXPPPPPP 495
           PPPP      PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 29.5 bits (63), Expect = 0.92
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 671 PPPPPPPPP 697
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 542 PPPPXXFXXXPPPPPPXXXGG 480
           PPP       PPPPPP    G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 675 PPPPPPPP 698
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 542 PPPPXXFXXXPPPPPP 495
           PPPP       PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = -2

Query: 540 PPPXXFFXXPPPPPPXXXXGXGGGGXIFKXTPP 442
           PPP       PPPPP        GG  +    P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 671 PPPPPPPPP 697
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 671 PPPPPPPPP 697
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +1

Query: 670 PXPPPPPPPPXXXXXKKXXXXXXXXXXXXXXXXXXXXXXPPPP 798
           P P PPPPPP     +                       PPPP
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 671 PPPPPPPPP 697
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 671 PPPPPPPPP 697
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 523 FXXPPPPPPPXXXGXGG 473
           F  PPPPPPP     GG
Sbjct: 944 FPPPPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 514 PPPPPPPXXXGXGGG 470
           PPPPPPP      GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +2

Query: 671  PPPPPPPPPXXXXXKKXXXXXXXXXXXXXXXXXXXXXXPPPPPP 802
            PPPPPP P                              PPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPP 950


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -3

Query: 542 PPPPXXF--XXXPPPPPP 495
           PPPP  F     PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect(2) = 0.93
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect(2) = 0.93
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 674 PPPPPPPP 697
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 670 PXPPPPPPPPXXXXXKK 720
           P  PPPPPPP     +K
Sbjct: 21  PSQPPPPPPPGYVKKRK 37



 Score = 21.0 bits (42), Expect(2) = 0.93
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 785 PPPPPP 802
           PPPPPP
Sbjct: 24  PPPPPP 29



 Score = 21.0 bits (42), Expect(2) = 0.93
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 785 PPPPPP 802
           PPPPPP
Sbjct: 25  PPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
 Frame = -1

Query: 514 PPPPPPPXXXGXG----GGGGDI*XXPPP 440
           PPPPPPP     G    G G      PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 23.8 bits (49), Expect(2) = 1.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 671 PPPPPPP 691
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 1.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 674 PPPPPPP 694
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 458 NIXPPPPXPXXXXGGGGGGXXKKXXGGGXFFFF 556
           N  PPPP      G G GG      GG   F F
Sbjct: 73  NAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHF 105


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671  PPPPPPPP 694
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 674  PPPPPPPP 697
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676  PPPPPPPP 699
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 674 PPPPPPPP 697
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 676 PPPPPPPP 699
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,834
Number of Sequences: 5004
Number of extensions: 37961
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)