Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_H16
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.010
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 32 0.093
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.22
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.66
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.66
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 8.3
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 9.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 KKKXPPPPPPXXXKKKKXXXXXXPP----PPPPPPP 472
KK+ PPPPPP + K PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Frame = +2
Query: 359 GGGXXXKKKXPPPPPPXXXKKKKXXXXXXPP----PPPPPPP 472
G G PPPPPP + PP PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP---RSNAAGSIPLPPQGRSAPPPPPP 366
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 383 KXPPPPPPXXXKKKKXXXXXXPPPPPPPP 469
K P PPP PPPPPPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +2
Query: 365 GXXXKKKXPPPPP--PXXXKKKKXXXXXXPPPPPPPPP 472
G PP PP P ++ P PPP PPP
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2
Query: 389 PPPPPPXXXKKKKXXXXXXPPPPPPPPP 472
PPPPPP PPPPPPPPP
Sbjct: 761 PPPPPPPPG-----VAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Frame = +2
Query: 380 KKXPPPPPPXXXKKKKXXXXXXPPP------PPPPPP 472
K PPPPP PPP PPPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 389 PPPPPPXXXKKKKXXXXXXPPPPPPPP 469
P P P PPPPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 32.3 bits (70), Expect = 0.093
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = +2
Query: 389 PPP---PPPXXXKKKKXXXXXXPPPPPPPPP 472
PPP PP PPPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 392 PPPPPXXXKKKKXXXXXXPPPPPPPPP 472
P PP K+ PPPPPP P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLP 247
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 389 PPPPPPXXXKKKKXXXXXXPPPPPPPPP 472
P PP K+ PPPPP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 389 PPPPPPXXXKKKKXXXXXXPPPPPPP 466
PPPPPP + PPPPPPP
Sbjct: 10 PPPPPPPGFEPPSQ-----PPPPPPP 30
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 365 GXXXKKKXPPPPPPXXXKKKK 427
G + PPPPPP KK+K
Sbjct: 17 GFEPPSQPPPPPPPGYVKKRK 37
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 446 PPPPPPPP 469
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 448 PPPPPPPP 471
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.66
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 446 PPPPPPPPP 472
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.66
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 446 PPPPPPPPP 472
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 446 PPPPPPPP 469
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 449 PPPPPPPP 472
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 446 PPPPPPPP 469
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 449 PPPPPPPP 472
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Frame = +2
Query: 389 PPPPPPXXXKKKKXXXXXXP--PPPPPPPP 472
P PPPP P PP PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.0 bits (47), Expect(2) = 8.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 446 PPPPPPPPP 472
PPPPP P P
Sbjct: 6 PPPPPAPAP 14
Score = 21.0 bits (42), Expect(2) = 8.3
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 389 PPPPPP 406
PPPPPP
Sbjct: 5 PPPPPP 10
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 446 PPPPPPPPP 472
PPPPP P P
Sbjct: 357 PPPPPMPAP 365
Score = 21.0 bits (42), Expect(2) = 9.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 389 PPPPPP 406
PPPPPP
Sbjct: 356 PPPPPP 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.158 0.554
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,604
Number of Sequences: 5004
Number of extensions: 14706
Number of successful extensions: 396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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