Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H12
         (1163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -1

Query: 560 PPPPXFFFXXPPPPPPXXXGGGXGGGXFXLNPP 462
           PPPP      PPPPPP       GG  +    P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.53
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 557 PPPXFFFXXPPPPPPXXXGGGXGGGXFXLNPPP 459
           PPP      PPPPPP    G  G G     PPP
Sbjct: 752 PPPAPIMGGPPPPPPPP--GVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 560 PPPPXFFFXXPPPPPPXXXGGG 495
           PP P      PPPPPP   G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG 774



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 560 PPPPXFFFXXPPPPPPXXXGGGXGGGXFXLNPPP 459
           PPPP       PPPPP        GG     P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 560 PPPPXFFFXXPPPPPPXXXGGGXGGGXFXLNPPP 459
           P PP       PPPPP   G    G      PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 560 PPPPXFFFXXPPPPPP 513
           PPPP F     PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 463 GGFXKKXPPPXPPPXXXGG-GGGGXKKKXXGGGGXF 567
           GGF      P P P   GG GG G +    GG G F
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF 226


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 475 KKXPPPXPPPXXXGGGGGGXKKKXXGGGGXFFFFXXXXPPP 597
           KK PPP PPP     G     K   G G          PPP
Sbjct: 308 KKRPPPPPPPSRRNRG-----KPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,419
Number of Sequences: 5004
Number of extensions: 23803
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)