Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H09
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -3

Query: 659 PPXXXXXGFXXPPXPXXGXXGGXPPPPXXXPPPPP 555
           PP     G   PP P  G  G  PPPP   PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 627 PPXPXXXXVXGXPPPPPXXXPPPXXXG 547
           PP P    V G  PPPP   PP    G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 624 PXPXXXXVXGXPPPPPXXXPPPXXXG 547
           P P    + G PPPPP   PPP   G
Sbjct: 750 PVPPPAPIMGGPPPPP---PPPGVAG 772



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 18/59 (30%), Positives = 18/59 (30%)
 Frame = -1

Query: 736 PPPPPXAGGXXXXXXXXXFXKXXGAPPPXXXGXVXXXPXXPXXXCXGXPPPPPXXXPPP 560
           PPPPP A                  PPP         P  P       PPPP    PPP
Sbjct: 732 PPPPPPA-----VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 623 PXPXXGXXGGXPPPPXXXPPPPP 555
           P       GG PPPP   PPPPP
Sbjct: 295 PSSGDSANGGLPPPP---PPPPP 314


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 556 GGGGGXXXGGGGXPPHXPXXGXGG 627
           GGG G   GG G PP  P  G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGP-GGFGG 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = -3

Query: 626 PPXPXXGXXGGXPPPPXX--XPPPPP 555
           PP P     G  P PP     PPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
 Frame = -1

Query: 736 PPPPPXAG--GXXXXXXXXXFXKXXGAPPPXXXGXVXXXPXXPXXXCXGXPPPPPXXXP 566
           PPPPP     G                PPP         P  P       PPPPP   P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS-APPPPPPRSAP 370


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 147  KKAXGVPRLSLWGPPXXRGIL 209
            KK  GVPR +L  P   RGIL
Sbjct: 1110 KKVFGVPRYALLKPSQTRGIL 1130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,745
Number of Sequences: 5004
Number of extensions: 25149
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)