Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H06
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           31   0.78 
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    30   2.4  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   3.2  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -2

Query: 781 PPXXGGGXXGGPXXGXPXGXPPXKRXXXXGPXGXXXEKPGXXPP 650
           PP    G  GGP  G   G PP        P     ++PG  PP
Sbjct: 217 PPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 609 GAGXPXXXWXXGXPGGXXPGFSXXXPXGPXXXXLXSGGSPXGXPXXGPPXXPP 767
           G   P   +  G PGG  PG     P G     +  GG P G P   P    P
Sbjct: 524 GGASPRGGFPGGMPGGGFPG---GMPGGGFPGGMPGGGFPGGMPGGFPGGAMP 573



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -1

Query: 770 GGGXXWXXXXGXPXRGXPGXKXGXAXPXXGPXGKTGGXXPG 648
           GG        G P  G PG   G   P   P G  GG  PG
Sbjct: 534 GGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPG 574


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +3

Query: 642 GXPGGXXPGFSXXXPXGPXXXXLXSGGSPXGXPXXGPPXXPPPXXG 779
           G P G  P  +   P G     +  G  P G P       PPP  G
Sbjct: 122 GPPSGAPPAQAQRTPFGGPPSAMSQGPLPFGGPPAAVASQPPPFGG 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,270
Number of Sequences: 37544
Number of extensions: 203449
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)