Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H04
         (1227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0561 - 3983308-3983564,3983652-3983775                           31   1.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       30   4.3  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    29   7.5  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   9.9  

>06_01_0561 - 3983308-3983564,3983652-3983775
          Length = 126

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 17/62 (27%), Positives = 20/62 (32%)
 Frame = -1

Query: 747 PPPPXXXGGGXXXGXXKKXXXXXXXXXGGGGXXXKKNKXKKKKXXXXXXXPPPPFXXLGG 568
           PPPP     G   G              GGG   K  + +  +       PPPP    GG
Sbjct: 37  PPPPSGAAAGEDNGGGSAIWAGVVAADTGGGGGEKAAQRRSLRRVGLHRTPPPPTSNDGG 96

Query: 567 XE 562
            E
Sbjct: 97  IE 98


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 19/62 (30%), Positives = 20/62 (32%)
 Frame = +3

Query: 564 PPPPXXKXGGGGXXXXXXXFFFXFYFFXXXPPPPXXXXXXXXXFFFXXPXXPPPPXXXGG 743
           PPPP    GGGG        +         PPPP                 PPP    GG
Sbjct: 70  PPPPSYPSGGGGGGGGGTVMY-------TSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGG 122

Query: 744 GG 749
           GG
Sbjct: 123 GG 124


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 513 PPPXXPPPPXXGGXG 469
           PPP  PPPP  GG G
Sbjct: 13  PPPQHPPPPQAGGGG 27


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 748 PPPPXXXGGGGXXGXXKKXXXXXXXXXXGGGG 653
           PP P   GGGG  G   K          GGGG
Sbjct: 346 PPTPDLGGGGGGGGGGTKVRVCAPKDISGGGG 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,811
Number of Sequences: 37544
Number of extensions: 507712
Number of successful extensions: 11536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10090
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)