Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_H02
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (...    30   2.4  
AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (...    28   7.5  

>AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (grd
           related) protein19 protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 489 GGGGGXXKXXPPPXXXXXXGGGXKKKXPPGXXK 391
           GGGGG     PPP      G G +KK   G  K
Sbjct: 37  GGGGGCCAPPPPPPVCGGCGCGGRKKREIGHVK 69


>AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (grd
           related) protein27 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 489 GGGGGXXKXXPPPXXXXXXGGGXKKKXP 406
           GGGGG     PPP      GG  K+  P
Sbjct: 25  GGGGGCGCGAPPPPPACGCGGRKKRSLP 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,685,943
Number of Sequences: 27780
Number of extensions: 114028
Number of successful extensions: 1613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)