Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G22
         (1416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.024
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   8.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.024
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 726 PPPPPPPXXXXKKKKXXPPPPP 661
           PPPPPPP       +  PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 726 PPPPPPPXXXXKKKKXXP 673
           PPPPPPP    K+K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41



 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 723 PPPPPPXXXXKKKKXXPP 670
           PPPPPP    KK+K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.072
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 724 PPPPPPXXXXXKKKXXPPPPPP 659
           PPPPPP          PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.1 bits (72), Expect = 0.096
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 724 PPPPPPXXXXXKKKXXPPPPPP 659
           PPPPPP          PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 726 PPPPPPPXXXXKKKKXXPPP 667
           PPPPPPP     K    P P
Sbjct: 308 PPPPPPPSNDFWKDSNEPAP 327


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
 Frame = -3

Query: 724 PPPPPPXXXXX------KKKXXPPPPPP 659
           PP PPP            KK  PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
 Frame = -1

Query: 726 PPPPPPPXXXXKKK---------KXXPPPPP 661
           PPPPPPP    + K            PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 726  PPPPPPPXXXXKKK 685
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,641
Number of Sequences: 5004
Number of extensions: 14958
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 786922488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)