Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G21
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.57 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 340 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
 Frame = +3

Query: 468 PALXPXXXXXXAGXPPPPXP---PSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFP 638
           P+L P          PP  P   P+    P      P       + PP  P  PA    P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480

Query: 639 XPXP 650
            P P
Sbjct: 481 APAP 484



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
 Frame = +3

Query: 468 PALXPXXXXXXAGXPPPPXPPS---XAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFP 638
           PAL P         PP P PPS    A         P       + PP  P  P     P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 639 XPXP 650
              P
Sbjct: 461 AGMP 464


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 504 GXPPPPXPP 530
           G PPPP PP
Sbjct: 304 GLPPPPPPP 312



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 510 PPPPXPPS 533
           PPPP PPS
Sbjct: 308 PPPPPPPS 315


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 331 PPPLRSLISNLSNTCDLTPLPEW 263
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 468 PALXPXXXXXXAGXPPPPXPP 530
           P   P      AG PPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,268
Number of Sequences: 5004
Number of extensions: 13681
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)