Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_G21
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 38 0.012
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.11
12_02_0299 - 17051570-17052474,17053542-17053755 33 0.34
03_01_0515 - 3864796-3865425 33 0.34
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 32 0.44
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 0.78
03_02_0342 - 7645323-7645909,7646323-7646491 29 4.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.5
11_01_0133 + 1121392-1122731,1123417-1123858 28 7.2
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 7.2
12_01_0319 + 2440129-2440661,2440875-2440902 23 9.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 9.6
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 9.6
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +3
Query: 480 PXXXXXXAGXPPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXPXXL 659
P A PPPP PP A P P G PP P P+ P P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 660 GXP 668
G P
Sbjct: 376 GPP 378
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 513 PPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP 650
PPP PP P P G PP P P P P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXPXXLGXPGXXG 680
PPPP P+ P G PP P PA P P P PG G
Sbjct: 322 PPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG 378
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +3
Query: 510 PPPPXPPSXAXX----PXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP 650
PPPP PP+ P F P PP P P FP P P
Sbjct: 289 PPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFP 339
>03_01_0515 - 3864796-3865425
Length = 209
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXP 620
PPPP PPS P P S PP P P
Sbjct: 71 PPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 468 PALXPXXXXXXAGXPPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPX 647
P P +G PP P PP P P G PP P P P P
Sbjct: 250 PPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMG-MPPRIPPPPVGGTQPPPP 308
Query: 648 PXXL 659
P L
Sbjct: 309 PPPL 312
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXP 644
PPPP PP P P + P +P P FP P
Sbjct: 305 PPPPPPPLANGPPRSIPPPPMTGGAMANFTPGAPPRPPMQGFPGP 349
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP 650
PPPP PP + P P + PP P P+ + P P
Sbjct: 1181 PPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSPSSLGYQPPAP 1227
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +3
Query: 468 PALXPXXXXXXAGXPPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPX 647
P P PPPP P S + P P S PP P P P P
Sbjct: 1155 PCQPPLPPSPPPATPPPPPPLSPSLPP------PPPPPPLPSGPPPQPAPPPLPIQPPPI 1208
Query: 648 P 650
P
Sbjct: 1209 P 1209
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP 650
PPPP PP+ P P PP +P PA P P
Sbjct: 176 PPPPRPPAPEYKPPTPTLTPIPTPEPSYGPP-APKPPAPPVEDEPQP 221
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP 650
PPPP PP P P PP +P FP P
Sbjct: 356 PPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPKATMARFPKLSP 402
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 510 PPPPXPPS-XAXXPXXXXFXPXXXRXXGSXPPXSPXXP 620
PPPP PPS A P P + PP P P
Sbjct: 134 PPPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPPQP 171
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXPXXLGXP 668
PPPP PPS F P S PP SP P P P P
Sbjct: 71 PPPPRPPS---------FAPENALPPSSPPPPSPPPPPPSSPPPVPPSPTAAP 114
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 510 PPPPXPPSXAXXP 548
PPPP PP A P
Sbjct: 49 PPPPPPPRAAAAP 61
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 501 AGXPPPPXPP 530
+G PPPP PP
Sbjct: 44 SGPPPPPPPP 53
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = +3
Query: 480 PXXXXXXAGXPPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSPXXPAXXXFPXPXP-XX 656
P AG PPPP PP P PP P P P P
Sbjct: 1099 PPPPSIGAGAPPPPPPPGGITGVPPP--PPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGG 1156
Query: 657 LGXP 668
LG P
Sbjct: 1157 LGGP 1160
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +3
Query: 510 PPPPXPPSXAXXPXXXXFXPXXXRXXGSXPPXSP--XXPAXXXFPXPXP 650
PPPP PPS + P P + P +P PA P P
Sbjct: 52 PPPPPPPSPSPSPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAEKPRP 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,693
Number of Sequences: 37544
Number of extensions: 186103
Number of successful extensions: 2383
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -