Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_G19
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 38 0.007
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.44
12_02_1174 - 26696869-26698191 29 3.1
12_02_0299 - 17051570-17052474,17053542-17053755 29 4.1
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.2
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 28 7.2
01_05_0490 + 22672241-22674679 28 7.2
05_01_0131 + 888247-888771,889092-889154 28 9.6
04_03_1022 - 21778315-21779007 28 9.6
03_05_0543 - 25404630-25405408,25405461-25405605 28 9.6
03_01_0515 - 3864796-3865425 28 9.6
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 38.3 bits (85), Expect = 0.007
Identities = 31/141 (21%), Positives = 41/141 (29%)
Frame = +1
Query: 283 VTSIXEVGDEAPERRGXPXXXXPAXXXXXXAPXXXXXPXXPXAFXSXSXSRPXLPPPXPX 462
+T++ V +P P + P P P + + + + P PPP P
Sbjct: 260 ITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPP 319
Query: 463 XPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWXPXXPXSXXP 642
P AA A P P PP PP + P P P P
Sbjct: 320 KP-------AAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 643 LPAXPHXXXXXXRHXRPPXXP 705
P RPP P
Sbjct: 373 KKGGPPPPPPKGGASRPPAAP 393
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.3 bits (70), Expect = 0.44
Identities = 26/98 (26%), Positives = 28/98 (28%)
Frame = +1
Query: 445 PPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWXPXX 624
PPP P P AF+ P P PP P P L P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSN-YASSQPPPPPPPPPLPNCLVPSP 602
Query: 625 PXSXXPLPAXPHXXXXXXRHXRPPXXPPXXXXXLSXXP 738
P P P P+ R PP PP S P
Sbjct: 603 PPPPPPPPILPN------RSVPPPPPPPPPLPNHSVLP 634
Score = 27.9 bits (59), Expect = 9.6
Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Frame = +1
Query: 334 PXXXXPAXXXXXXAPXXXXXPXXPXAFXSXSXSRPXLPPPXPXXPXXXXXXXAAFAXPAX 513
P P+ +P P P + + PPP P P P+
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNC------LVPSP 602
Query: 514 XPXXXXPPXPPXR-XXPXXXXXXQXPXAXLLXXWXPXXPXSXXP--LPAXPHXXXXXXRH 684
P PP P R P P +L P P P L P +
Sbjct: 603 PPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKF 662
Query: 685 XRPPXXPP 708
PP PP
Sbjct: 663 PAPPPPPP 670
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 436 PXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXR 552
P LPPP P P PA PP PP R
Sbjct: 214 PTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPR 252
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/91 (26%), Positives = 25/91 (27%)
Frame = +1
Query: 436 PXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWX 615
P LP P P P A P P P PP P P
Sbjct: 238 PFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAP-PPAFPFPHLPPIFSPPSPP--PPPP 294
Query: 616 PXXPXSXXPLPAXPHXXXXXXRHXRPPXXPP 708
P P LP PH + PP PP
Sbjct: 295 PAFPFPFPQLPPLPHFPPLPSFYPSPPPPPP 325
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 436 PXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPP 546
P LPPP P +FA P+ P PP PP
Sbjct: 54 PTLPPPPMSTPPVVAPPMHSFA-PSFRPLGAPPPPPP 89
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/93 (24%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Frame = +1
Query: 445 PPPXPXXPXXXXXXXAAFAXPAXX---PXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWX 615
PPP P AAF P P PP P + +
Sbjct: 44 PPPGPGARNPAASSAAAFRPPPQPQQQPRVETPPPPSYGFHNLDRRTMLLADGSVRTYFA 103
Query: 616 --PXXPXSXXPLPAXPHXXXXXXRHXRPPXXPP 708
P P PLP PH PP PP
Sbjct: 104 LPPDYPFELTPLPQLPHLPRGAGHEVWPPHHPP 136
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = +1
Query: 430 SRPXLPPPXPXX---PXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXP 588
SRP PPP P P + P P PP PP P + P
Sbjct: 660 SRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPPPPPPPPMSEGEEEAP 715
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/88 (23%), Positives = 22/88 (25%)
Frame = +1
Query: 445 PPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWXPXX 624
PPP P P P P PP PP P P P
Sbjct: 81 PPPPPSTPTQFSVLRKVPTGP--DPITSDPPPPPLSEFPVLREVPSGPDPITSDPPPPPP 138
Query: 625 PXSXXPLPAXPHXXXXXXRHXRPPXXPP 708
P S P+ PP PP
Sbjct: 139 PLSEFPVLREVPSGPDPITSDPPPPPPP 166
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/89 (24%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Frame = +1
Query: 445 PPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWXPXX 624
PPP P +A P P PP PP P P
Sbjct: 16 PPPPPPATRARPPCSSAHLLPPPPP----PPPPPPYVPPHLLPPSPAPQQWYDHPPNYHP 71
Query: 625 PXSXXPLPA-XPHXXXXXXRHXRPPXXPP 708
P + P PA P+ H PP P
Sbjct: 72 PHTPAPAPAPGPYIPPHHPHHHHPPTPAP 100
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 432 PPXAPPPXPGXXXXXXXXXXGVRXPRXLPXXXXAPAP 542
PP PP P GVR P P APAP
Sbjct: 128 PPPQQPPQPEPRRPPAAPLPGVRTPPSPPRRAPAPAP 164
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 394 PXXPXAFXSXSXSRPXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPP 546
P P + S P LPPP P P + P P PP PP
Sbjct: 72 PPPPPPSVTSSPPPPPLPPPPP--PPAASPPPPPPSPPPPSPVKSSPPPPP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,300,659
Number of Sequences: 37544
Number of extensions: 180751
Number of successful extensions: 796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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