Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G19
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   4.2  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                29   5.6  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      28   9.8  

>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +1

Query: 418 SXSXSRPXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXP 561
           S   + P  PPP    P       A  A P   P    PP PP +  P
Sbjct: 56  SPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAP 103


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/57 (28%), Positives = 17/57 (29%)
 Frame = +1

Query: 376 PXXXXXPXXPXAFXSXSXSRPXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPP 546
           P     P  P         +P  PPP P  P            PA  P    PP PP
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +1

Query: 394 PXXPXAFXSXSXSRPXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXP 561
           P  P        S P  PPP P  P            P   P    PP PP    P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 28/111 (25%), Positives = 31/111 (27%), Gaps = 2/111 (1%)
 Frame = +1

Query: 334 PXXXXPAXXXXXXAPXXXXXPXXPXAFXSXSXSRPXLP--PPXPXXPXXXXXXXAAFAXP 507
           P    P        P     P  P A  + S   P  P  P  P  P         F  P
Sbjct: 248 PETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPPAPPNLFI-P 306

Query: 508 AXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXXWXPXXPXSXXPLPAXPH 660
           +  P    PP PP    P        P A       P  P    P PA P+
Sbjct: 307 SAPPNPHIPPAPPNPYIPTAPPNPSIPPAPPNPSIPPAPPNPSIP-PAPPN 356



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/66 (27%), Positives = 21/66 (31%)
 Frame = +1

Query: 430 SRPXLPPPXPXXPXXXXXXXAAFAXPAXXPXXXXPPXPPXRXXPXXXXXXQXPXAXLLXX 609
           ++P   PP P  P          A P+  P    PP PP    P        P A L   
Sbjct: 170 TKPETKPPKPPAPSTIPTPPTPPAPPSP-PIPTAPPTPPMPETPLPPGSPHIPPAPLHPH 228

Query: 610 WXPXXP 627
             P  P
Sbjct: 229 IPPAPP 234


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/76 (22%), Positives = 19/76 (25%)
 Frame = +1

Query: 316 PERRGXPXXXXPAXXXXXXAPXXXXXPXXPXAFXSXSXSRPXLPPPXPXXPXXXXXXXAA 495
           P     P    P        P     P  P        + P  PPP P  P         
Sbjct: 162 PPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPP 221

Query: 496 FAXPAXXPXXXXPPXP 543
           +  P   P    PP P
Sbjct: 222 YPPPPNAPNPPYPPPP 237


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +1

Query: 424 SXSRPXLPPPXPXXPXXXXXXXAA--FAXPAXXPXXXXPPXPP 546
           S S+   PPP P  P       A+  F  P   P    PP PP
Sbjct: 273 SASQNATPPPPPPPPSNTPGMFASSGFQPPPPPPTDFAPPPPP 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,965
Number of Sequences: 59808
Number of extensions: 131588
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)