Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G13
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           30   2.2  
01_05_0556 + 23236156-23236364,23236623-23236689,23236903-232371...    28   6.7  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 79  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MHDEXKRK 186
           RL+R RK +  D+   G  + +GEKLE   ++ K K
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEKLK 92


>01_05_0556 +
           23236156-23236364,23236623-23236689,23236903-23237108,
           23237284-23237510,23237865-23237926
          Length = 256

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 183 PFXFVVHLFKLLSLPPRSTASW*ILAMFL 97
           P   +++LF   +L PR+T  W ++A FL
Sbjct: 36  PRLTLLYLFDFATLTPRTTTGWCVIAAFL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,926
Number of Sequences: 37544
Number of extensions: 103091
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)