Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G09
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       34   0.14 
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    29   6.8  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 516 GGGXXXKXGGGXXXPP--GGGXXPP--PPXXXXGXXXKXXXXGGG 638
           GGG     GGG   PP  GGG  PP  PP    G   +    GGG
Sbjct: 94  GGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGG 138



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
 Frame = +3

Query: 516 GGGXXXKXGGGXXXPP--------GGGXXPPPPXXXXGXXXKXXXXGGG 638
           GGG     GGG   PP        GGG  PP P    G        GGG
Sbjct: 103 GGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGG 151


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 543 GGXXXPPGGGXXPPPPXXXXGXXXKXXXXGGG 638
           GG   P GGG   PPP    G        GGG
Sbjct: 383 GGRPMPGGGGPGAPPPYHGGGGGGGGGGGGGG 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,851
Number of Sequences: 37544
Number of extensions: 279985
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)