Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G04
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   139   2e-33
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   139   2e-33
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     31   1.4  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     29   3.2  
09_04_0225 - 15855544-15855727,15855796-15856406                       29   3.2  
06_03_0543 + 21967787-21970261                                         29   5.5  
12_02_1057 + 25733376-25735439                                         28   9.6  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  139 bits (337), Expect = 2e-33
 Identities = 61/103 (59%), Positives = 76/103 (73%)
 Frame = -1

Query: 664 PGVFXNQIQAAFRELRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG F NQ+Q +F E R LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 484 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 356
            K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 169 NKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 777 LETPXXVFVILXRPXGQRXVXNFPAHTRCYAYCG 676
           +E P  + V   RP GQR V  F  +T  +A  G
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  139 bits (337), Expect = 2e-33
 Identities = 61/103 (59%), Positives = 77/103 (74%)
 Frame = -1

Query: 664 PGVFXNQIQAAFRELRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG F NQ+Q +F E R LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 484 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 356
            K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 169 NKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 777 LETPXXVFVILXRPXGQRXVXNFPAHTRCYAYCG 676
           +E P  + V   RP GQR V  F  +T  +A  G
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRRMVCPGTRRVEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRRMVCPGTRRV 137
           TRC  C    P   R  CPG+R V
Sbjct: 81  TRCKECLARAPAGVRQECPGSRAV 104


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRRMVCPGTRRVEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 220 PACCTRCSSCF-WSTPCSRRMVCPGTRRVEHNCRRTSRRHR 101
           P+  TRC SC  W+T C      PGT R      RTS R+R
Sbjct: 174 PSATTRCRSCTAWATSC------PGTSRAGCPPTRTSGRNR 208


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRRMVCPGTRRVEHN 128
           T+C  C    P     VCPG+R  + N
Sbjct: 93  TQCQECLAGAPAGIVQVCPGSRTADAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,154
Number of Sequences: 37544
Number of extensions: 379014
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)