Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G03
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 337 RAPPPP----LRSXISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS    L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 615 PXSPP-PPPAXXXXPXPXGXSXVXXXPPSXP 704
           P +PP PP A    P P G       PP+ P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/64 (26%), Positives = 18/64 (28%)
 Frame = +3

Query: 615 PXSPPPPPAXXXXPXPXGXSXVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHPX 794
           P +PP  P       P G       PPS P     L       PP       P     P 
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAP-IAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483

Query: 795 PHPP 806
           P  P
Sbjct: 484 PAAP 487


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 328 PPPLRSXISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 621  SPPPPPAXXXXPXPXGXSXVXXXPPSXP 704
            +P PPP     P P     +   PPS P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,977
Number of Sequences: 5004
Number of extensions: 19132
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)