Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G03
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    33   0.32 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.0  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   5.3  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   5.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.0  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = -3

Query: 752 GWGXXGGXFX*XXXXGXXXRXXXXXXGGTXGXGGXXXGGGGGWAXWXXXGXXXXXGXG 579
           GWG  GG        G          GG  G GG   G GGG   W   G     G G
Sbjct: 48  GWGNNGGG-----GWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGG 100



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 674 GGTXGXGGXXXGGGGGWAXWXXXGXXXXXG 585
           GG  G GG    GGGGW      G     G
Sbjct: 41  GGGGGPGGWGNNGGGGWGRGGGRGGGDWGG 70


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
 Frame = +3

Query: 621 SPPPPPAXXXXPXPXGXS--XVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHPX 794
           SPPPPP     P P G S        P  P          S  PP       P     P 
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330

Query: 795 PHP 803
           P P
Sbjct: 331 PPP 333



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +3

Query: 609 AXPXSPPPPPAXXXXPXPXGXSXVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXH 788
           A   SPPPPPA    P P   S     PP  P          S  PP       P     
Sbjct: 250 AGSGSPPPPPAAGSPPPPRTGS-----PPPPP--------TGSPPPPPAGGSPPPPRAGS 296

Query: 789 PXPHPP 806
           P P PP
Sbjct: 297 PPPPPP 302


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
 Frame = +3

Query: 621 SPPPPPAXXXXPXPXGXS--XVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHPX 794
           SPPPPP     P P G S        P  P          S  PP       P     P 
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351

Query: 795 PHP 803
           P P
Sbjct: 352 PPP 354



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +3

Query: 609 AXPXSPPPPPAXXXXPXPXGXSXVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXH 788
           A   SPPPPPA    P P   S     PP  P          S  PP       P     
Sbjct: 271 AGSGSPPPPPAAGSPPPPRTGS-----PPPPP--------TGSPPPPPAGGSPPPPRAGS 317

Query: 789 PXPHPP 806
           P P PP
Sbjct: 318 PPPPPP 323


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
 Frame = +3

Query: 621 SPPPPPAXXXXPXPXGXS--XVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHPX 794
           SPPPPP     P P G S        P  P          S  PP       P     P 
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336

Query: 795 PHP 803
           P P
Sbjct: 337 PPP 339



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +3

Query: 609 AXPXSPPPPPAXXXXPXPXGXSXVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXH 788
           A   SPPPPPA    P P   S     PP  P          S  PP       P     
Sbjct: 256 AGSGSPPPPPAAGSPPPPRTGS-----PPPPP--------TGSPPPPPAGGSPPPPRAGS 302

Query: 789 PXPHPP 806
           P P PP
Sbjct: 303 PPPPPP 308


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 609 AXPXSPPPPPAXXXXPXPXGXSXVXXXPPSXP 704
           A P  PPPPP     P P   S     P S P
Sbjct: 87  AKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 118


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 609 AXPXSPPPPPAXXXXPXPXGXSXVXXXPPSXP 704
           A P  PPPPP     P P   S     P S P
Sbjct: 309 AKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 340


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
 Frame = +3

Query: 615 PXSPPPPPAXXXXPXPXGXS-XVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHP 791
           P  PPPPP+    P P   +  +   PP  P             PP       P     P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMW---PPPPPPPPGRTPGPPGMPGMP 317

Query: 792 XPHPP 806
            P PP
Sbjct: 318 PPPPP 322


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +3

Query: 621 SPPPPPAXXXXPXPXGXSXVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHPXPH 800
           SPPPPP       P   S     PP  P       +     PP       P     P P 
Sbjct: 137 SPPPPPPPRVPRTPPPRSPPPRRPPMTPPSP---QRRPPRTPPSPEPRNPPRTPPSPIPP 193

Query: 801 PP 806
           PP
Sbjct: 194 PP 195


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
 Frame = +3

Query: 615 PXSPPPPPAXXXXPXPXGXS-XVXXXPPSXPXXXXXLXKXXSXXPPXXXLXAXPXXXXHP 791
           P  PPPPP+    P P   +  +   PP  P             PP       P     P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMW---PPPPPPPPGRTPGPPGMPGMP 327

Query: 792 XPHPP 806
            P PP
Sbjct: 328 PPPPP 332


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 674 GGTXGXGGXXXGGGGGWA 621
           GG  G GG   GGGGG+A
Sbjct: 119 GGGGGCGGGGGGGGGGYA 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,254,996
Number of Sequences: 27780
Number of extensions: 165768
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)