Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G02
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical
           protein F18E3.11 protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 83  STTPRQERKSSTDYSEPRHRTEVYPDLRSRDARVKKKTDSIDLHDPNGLRRRVS 244
           STT    RKSST    PRH   +     +   ++ +   S  L+D N L+R+ S
Sbjct: 30  STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 438 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 259
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 258 SH--SKRETRRRSP 223
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +2

Query: 95  RQERKSSTDYSEPR---HRTEVYPDLRSRDARV--KKKTDSIDLHDPNGLRRRVSRFECE 259
           R +R  +   S PR   H ++V  +LR+ DA+   K  +D+  LHD     R +SR  C+
Sbjct: 13  RGQRVFAFGSSTPRDLSHMSKVPQNLRNYDAKSVDKSPSDAPSLHDYIVKARSLSREACD 72

Query: 260 TR 265
           +R
Sbjct: 73  SR 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,025
Number of Sequences: 27780
Number of extensions: 293372
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)