Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G02
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.74 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.98 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 47  SLNRSQHDAALPSTTPRQERKSST 118
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 291 GSKQCDFTSRVSHSKRETRRRSPFGSWRSMLSVFFLTRASRLRRSGYTSVRCR 133
           GS     TS+ S  +R+T+       WR  L       + R RR    +  CR
Sbjct: 400 GSMTVSVTSKPSTMERQTQTEVWIPKWRQFLYCLAGDESFRKRRQREAAGNCR 452


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 ALGRAAGGAKLPSAGLCLNASKAEASL 340
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 ALGRAAGGAKLPSAGLCLNASKAEASL 340
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 ALGRAAGGAKLPSAGLCLNASKAEASL 340
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 ALGRAAGGAKLPSAGLCLNASKAEASL 340
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 394 RTTGRSAECMNQMSETAVPLVLSS 465
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 252 SKRE-TRRRSPFGSWRSMLSVFFLTRASRLRRSGYTSVRCRGSE*SVDDFRSWRGVVLGR 76
           ++RE  R  +PF +  +  S   L RA    RSG TSV+   +E     F    G + GR
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE-----FGIPTGTLYGR 556

Query: 75  A-ASCCDLLRLSPAP 34
                 +L R +P P
Sbjct: 557 CKREGIELSRSNPTP 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,126
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)