Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_G01
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   123   2e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   123   2e-28
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   5.1  
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691           29   5.1  
06_03_0543 + 21967787-21970261                                         29   5.1  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    29   5.1  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  123 bits (296), Expect = 2e-28
 Identities = 61/127 (48%), Positives = 78/127 (61%)
 Frame = -3

Query: 734 FGQXXVXKFAAHXRXYAYCGTFHTRXFX*PRSKXHXXEXXXLIVLDXAQDHQPIXEASYV 555
           +GQ  V KFA +   +A  G  HT      + +    E   LI+ D   DHQPI E++  
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALG 144

Query: 554 NIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 375
           NIP IA C+TDSP R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204

Query: 374 LFFYRXP 354
           LFFYR P
Sbjct: 205 LFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  123 bits (296), Expect = 2e-28
 Identities = 61/127 (48%), Positives = 79/127 (62%)
 Frame = -3

Query: 734 FGQXXVXKFAAHXRXYAYCGTFHTRXFX*PRSKXHXXEXXXLIVLDXAQDHQPIXEASYV 555
           +GQ  V KFA +   +A  G  HT      + +    E   LI+ D   DHQPI E++  
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALG 144

Query: 554 NIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 375
           NIP IA C+TDSP R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VD
Sbjct: 145 NIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204

Query: 374 LFFYRXP 354
           LFFYR P
Sbjct: 205 LFFYRDP 211


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 206 TRCGSCFWSTPCSRRMVCPGTR*VEHN 126
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
          Length = 280

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 468 VGRLGVAWDSNV-HKSXWGVCVAQSNHRNVDI*SFXNGL 581
           V  LG+A D+NV H   WG C A S  R V I S+ +GL
Sbjct: 205 VSSLGLAGDANVLHFGAWG-CTADSRIRRV-ISSYLSGL 241


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 441 QQPPHQTNRVGRLGVAWDSNVHKSXWGVCVAQS 539
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,165
Number of Sequences: 37544
Number of extensions: 290023
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)