Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_F24
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 31 1.0
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008... 31 1.3
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 30 2.3
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281... 29 3.1
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 29 4.0
05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846 29 4.0
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 29 5.3
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 29 5.3
09_04_0377 + 17086775-17088310 28 9.3
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391... 28 9.3
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 9.3
01_01_0958 + 7518784-7519388,7520387-7520450,7520737-7520850 28 9.3
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +1
Query: 88 VSRYLQQMRLP-----TVSRIVTLLAPSVRNPPLKKTDLRPE 198
V+R+L+Q RLP ++SRI L+ S PPLK+ D P+
Sbjct: 987 VARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQ 1028
>09_04_0315 +
16600387-16600557,16600652-16600801,16600874-16600897,
16601519-16602694,16603120-16603266,16603477-16603752
Length = 647
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 155 LSGTHR*RKLICGLSELRGEQGGPYIVLGG 244
L G ++ + L+ L EL+G+Q G Y+V+GG
Sbjct: 50 LYGKYKAKVLLSVLDELKGQQDGYYVVVGG 79
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Frame = -3
Query: 557 CDTRSRRYXAHTYCCNRHNHGHNDCHTTQYCQ---CSCPE*KRTNIPVGSAALLFRTRHS 387
C + + YCCN + CH +QY Q +CP K + A F H+
Sbjct: 185 CRSACEAFGRPEYCCNGAYGNPDTCHPSQYSQLFKSACP--KSYSYAYDDATSTFTCNHT 242
Query: 386 SAGRERCVKDGPRS 345
C + P S
Sbjct: 243 DYTITFCPRSTPSS 256
>03_03_0144 +
14826797-14827435,14827561-14827771,14827861-14828155,
14828285-14828674,14829131-14829208,14829296-14829518
Length = 611
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 439 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPEN 269
G F +Y L + P NG RTA G LG+ L +V++ + AP +
Sbjct: 179 GTQFPQGADKYIDHLASVIPIANGKVRTALDTGCGVASLGAYLLKKNVLTMSFAPRD 235
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 440 RTNIPVGSAALLFRTRHSSAGRERCVKDGP 351
R +I GSA+L FR R +S RC D P
Sbjct: 25 RPSIHAGSASLTFRARPNSVSIVRCDADSP 54
>05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846
Length = 361
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 139 TLLAPSVRNPPLKKTDLRPERTAGRAGWSLHRPGRAGVAPVARHSPGPKQ 288
TLL+PS PL+ + +P A A S P R+ V+ R P Q
Sbjct: 65 TLLSPSTLLSPLRGSKKKPASPAASASSSSSSPARSVVSCALRRQQPPPQ 114
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 216 RVVLTSSWAGRCGASRTAFSGAEAVDTTSEADRTLPRSTLTAPATGAVLDAPFPSGG 386
R+ +++S AG AS + +G D S +R L S APA+ P GG
Sbjct: 46 RLAVSASSAGAGAASPSPAAGWGRSDAASSLERCLAASGSAAPASAPTRAPPAMKGG 102
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 439 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENA 266
G F +Y +L + P NG RTA G G+ L +V++ + AP ++
Sbjct: 180 GTQFPQGADKYIDQLASVVPIANGTVRTALDTGCGVASWGAYLLKRNVLAMSFAPRDS 237
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 199 RTAGRAGWSLHRPGRAGV----APVARHSPGPKQ*TLRRKLTERCPDRH*LHQLRGPS 360
RT GR +H PGR+ V +P R SP R + +R P + + R PS
Sbjct: 3 RTEGRLASVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRDRSPS 60
>07_02_0032 -
12037507-12038435,12038475-12038586,12038912-12039199,
12039395-12039622
Length = 518
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 104 CKXRETLKPPSRHWKTLLLRQVP 36
C +ET P +R+WKTL+ P
Sbjct: 491 CLEKETTMPRNRYWKTLVKSSTP 513
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 9.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 430 IFVRFYSGQEHWQYWV 477
+ V + SG EHW YW+
Sbjct: 78 VLVHYQSGWEHWAYWL 93
>01_01_0958 + 7518784-7519388,7520387-7520450,7520737-7520850
Length = 260
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 403 SELGTAPP--EGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENAVRLAPHL 245
++L APP +G A AP A V G+ V TAS +AV LAP L
Sbjct: 21 ADLAHAPPPHDGGAAEDDAPAVAAALV-AGAPAHHRHVTHTASGRAHAVLLAPPL 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,500
Number of Sequences: 37544
Number of extensions: 416121
Number of successful extensions: 1376
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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