Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_F21
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 23 8.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 23 8.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 23 9.1
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.41
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Frame = +1
Query: 538 PXXGPH-LXPNSXAPXXRXXXXGXXPRLPXXPXPXXPXTLLPXXLPXXXXXXXPPXXXXX 714
P G H P P + G P P P P P T P P PP
Sbjct: 113 PQHGDHEASPPPPPPPRKSRAGGSSP--PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR 170
Query: 715 XPXXPXPRXXXXPXXXXPXPXXSPP 789
P P P P P PP
Sbjct: 171 PPRTPPSPEPRNPPRTPPSPIPPPP 195
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +1
Query: 481 PPLXXSARTXPPRXXXPXXPXXGPHLXPNSXAPXXRXXXXGXXPRLPXXPXPXXPXTL 654
PP RT PPR P P P PR P P P P L
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRL 198
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +2
Query: 470 PXPXXPSXXPPEQXPPXXXXXXPRXXGXISXRTXXXPXXXAPXRXPXPASP 622
P P P PP PP P RT P P R P P
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIP 192
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 412 PPX*XGGXPPPPPXF 368
PP GG PPPPP F
Sbjct: 76 PPPGPGGIPPPPPMF 90
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 412 PPX*XGGXPPPPPXF 368
PP GG PPPPP F
Sbjct: 97 PPPMMGGIPPPPPMF 111
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +2
Query: 470 PXPXXPSXXPPE-QXPPXXXXXXPRXXGXISXRTXXXPXXXAPXRXPXPASPXXXSP 637
P P P PP PP P G S AP R P SP SP
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 354
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +2
Query: 470 PXPXXPSXXPPE-QXPPXXXXXXPRXXGXISXRTXXXPXXXAPXRXPXPASPXXXSP 637
P P P PP PP P G S AP R P SP SP
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 375
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +2
Query: 470 PXPXXPSXXPPE-QXPPXXXXXXPRXXGXISXRTXXXPXXXAPXRXPXPASPXXXSP 637
P P P PP PP P G S AP R P SP SP
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 360
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 410 PXLKXGXPPPPP 375
P + G PPPPP
Sbjct: 752 PPISGGPPPPPP 763
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 389 PPPPPXVFXP 360
PPPPP +F P
Sbjct: 786 PPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 410 PXLKXGXPPPPP 375
P + G PPPPP
Sbjct: 752 PPISGGPPPPPP 763
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 389 PPPPPXVFXP 360
PPPPP +F P
Sbjct: 786 PPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 23.0 bits (47), Expect(2) = 9.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 410 PXLKXGXPPPPP 375
P + G PPPPP
Sbjct: 335 PPISGGPPPPPP 346
Score = 23.0 bits (47), Expect(2) = 9.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 389 PPPPPXVFXP 360
PPPPP +F P
Sbjct: 369 PPPPPGMFAP 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,192,527
Number of Sequences: 27780
Number of extensions: 143256
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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