Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F20
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   2.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.7  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    25   8.6  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 17  SRHIDIRSLLELRID*LASNYCSRETLLHVSPPGXSLEYLLLPPRSAPTEAPSGLTPRPF 196
           S+H +  ++L L+   +A N      L HV PP  S  +LL   RS  T+APS L  R F
Sbjct: 45  SKHQEEITILALK-PLIAMNNSEEWPLKHVQPPKLSFRHLL--SRSV-TDAPS-LRVRWF 99

Query: 197 CAL-RRARPTRYG 232
            A+ R  R +R G
Sbjct: 100 YAVDRPLRKSRTG 112


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 663  SWRRYKILKQXHPVKRMIRGIGAETTSTYSQ 571
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 434 FLGALTLRLVHPTAPVLLTKIGPLGTVIRSPGFIVRVSRSSHPFKV 571
           FL       +  T P+L+T++ P  T ++    + R     HP KV
Sbjct: 193 FLNVREFAQLKGTLPILITELQPSLTPLQEADHVKRGLPLGHPLKV 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,809
Number of Sequences: 5004
Number of extensions: 61019
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)