Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F17
         (1154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   0.077
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.095
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.81 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.93 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.5  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect(2) = 0.077
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 396 PPPPPPPXEXXKKTP 352
           PPPPPPP E    +P
Sbjct: 370 PPPPPPPPELLNHSP 384



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 399 PPPPPPPP 376
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 24.2 bits (50), Expect(2) = 0.077
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 408 FXXPPPPPPP 379
           +  PPPPPPP
Sbjct: 368 YSPPPPPPPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect(2) = 0.095
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 397 PPPPPPPXGXXKKNPP 350
           PPPPPPP G     PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 399 PPPPPPPPXEXXKKTPP 349
           PPPPPPPP       PP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect(2) = 0.75
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 400 PPPPPPPP 377
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 399 PPPPPPPP 376
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 0.095
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 409 LXXPPPPPP 383
           L  PPPPPP
Sbjct: 729 LKSPPPPPP 737



 Score = 21.4 bits (43), Expect(2) = 0.75
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 409 LXXPPPPPPP 380
           L   PPPPPP
Sbjct: 728 LLKSPPPPPP 737


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 399  PPPPPPPPXEXXKK 358
            PPPPPPPP E  KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 396 PPPPPPPXEXXKKTPPV 346
           PPPPPPP    +  PP+
Sbjct: 311 PPPPPPPSRRNRGKPPI 327



 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 438 KKXFXGGGXXFXXPPPPPPP 379
           K     G      PPPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPP 343



 Score = 24.6 bits (51), Expect(2) = 0.81
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 423 GGGXXFXXPPPPPPPP 376
           G G      PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343



 Score = 23.4 bits (48), Expect(2) = 0.81
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 399 PPPPPPPPXEXXKKTPP 349
           PPPPPP       + PP
Sbjct: 361 PPPPPPRSAPSTGRQPP 377



 Score = 22.2 bits (45), Expect(2) = 1.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 399 PPPPPPPPXEXXKKTPPV 346
           PPPPP       ++ PP+
Sbjct: 362 PPPPPRSAPSTGRQPPPL 379


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 400 PPPPPPPPXGXXKKNPP 350
           PPPPPPPP       PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 399 PPPPPPPPXEXXKKTPP 349
           PPPPPPP  E   + PP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = -2

Query: 400 PP--PPPPPPXGXXKK 359
           PP  PPPPPP G  KK
Sbjct: 20  PPSQPPPPPPPGYVKK 35



 Score = 22.6 bits (46), Expect(2) = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 399 PPPPPPPPXEXXK-KTP 352
           PPPPPP   +  K KTP
Sbjct: 25  PPPPPPGYVKKRKNKTP 41



 Score = 21.8 bits (44), Expect(2) = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 408 FXXPPPPPPPP 376
           F  P  PPPPP
Sbjct: 18  FEPPSQPPPPP 28


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 408 FXXPPPPPPPP 376
           +  PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 394  PPPPPPXGXXKKNPP 350
            PPPPPP    K  PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 399 PPPPPPPP 376
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 400 PPPPPPPP 377
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 400 PPPPPPPP 377
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 399 PPPPPPPP 376
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.148    0.505 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,560
Number of Sequences: 5004
Number of extensions: 16076
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)