Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F17
         (1154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.41 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 400  PPPPPPPP 377
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.4 bits (53), Expect = 0.96
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 400  PPPPPPPPXG 371
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 400  PPPPPPPPXGXXKKN 356
            P PPPPPP    + N
Sbjct: 1857 PEPPPPPPRNHDQNN 1871


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 400 PPPPPPPP 377
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 400 PPPPPPPPXG 371
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.148    0.505 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,034
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39162825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)