Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F15
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   168   8e-43
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   159   4e-40
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   1.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.6  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   3.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.5  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   8.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  168 bits (408), Expect = 8e-43
 Identities = 81/132 (61%), Positives = 98/132 (74%)
 Frame = -1

Query: 472 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 293
           Q+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II  P+ SE
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSE 69

Query: 292 AAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 113
           +AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+V+L+ D 
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADA 129

Query: 112 DALDVANKIGII 77
           DALDVAN+IG +
Sbjct: 130 DALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  159 bits (386), Expect = 4e-40
 Identities = 77/132 (58%), Positives = 95/132 (71%)
 Frame = -1

Query: 472 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 293
           Q+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II  P+ SE
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSE 69

Query: 292 AAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 113
           +AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+V+L+ D 
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADA 129

Query: 112 DALDVANKIGII 77
           DALDVAN+IG +
Sbjct: 130 DALDVANRIGFL 141


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
 Frame = -2

Query: 354 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQTSTI------SRLQSRNSM 193
           + L  IA+  T SL  +   K+  R +  T PW +LS+Q     I      +RL S+N  
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKT 392

Query: 192 I*MLL---KSTLSSGLMVRRKRTYDSL 121
           +  +     +T+SSG+M +  R  + +
Sbjct: 393 VSNVYDESNATISSGVMQKDLRKTEEI 419


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 221 MVLVCTCVDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 352
           MV++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 395 LGSAEMHRVANFPYSLPMFTFY--NLPLSLKCFSNRFHYFFCPLIPVFLGFGAIF 553
           LG      +A+   + P+ TF   N  +SL   +NR   FFC +I  F+G  A F
Sbjct: 385 LGDGLASLIASLMTTTPLTTFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKF 439


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 104 QCVIISSESYVRFLLTIRPDESVDFSNIY 190
           +C+ I  E +  FL  I+P E+V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 101 VQCVIISSESYVRFLLTI--RPDESVDFSNIYIIEFLDCSLDMV 226
           V   I S +S+  FL+      D+SVD  ++ I+   +CS D++
Sbjct: 45  VVTTITSYQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADIL 88


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 62  IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDESVDF 178
           +W +++ A FV +   + +S    +RFL  ++P +  DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = -1

Query: 334  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 182
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 68  NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 163
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 428 FPYSLPMFTFYNLPLSLKCFSNRFHYFFCPLIPVFLGFGAIFNL 559
           + Y LP+  F  +PL +   S RF+    P   +F+  G +F L
Sbjct: 275 YAYLLPLCVFV-IPLIILAVSKRFYKHTPPSGSIFVRVGQVFFL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,907
Number of Sequences: 5004
Number of extensions: 46874
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)